Basic Information
Locus ID:
Thhalv10025009m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 10908241 | 10912156 | + | Thhalv10025009m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 55,741.86 Da | 41.55 | 81.66 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 316 | 493 | 6.57256E-115 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 4 | 94 | 8.6E-14 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 315 | 422 | 1.1E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 318 | 448 | 9.15E-20 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 115 | 2.8E-32 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 305 | 493 | 6.2E-72 | - |
| SMART | SM00232 | pad1_6 | 318 | 446 | 2.6E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 319 | 449 | 29.354856 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_010434880.1 | PREDICTED: AMSH-like ubiquitin thioesterase 3 isoform X1 [Camelina sativa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | V4MGZ3 | MPN domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10025009mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology