Basic Information
Locus ID:
Thhalv10024819m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 1350891 | 1354702 | + | Thhalv10024819m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 63,810.15 Da | 67.44 | 70.61 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 190 | 242 | 3.99494E-27 | - |
| Pfam | PF12315 | Protein DA1 | 339 | 553 | 2.9E-104 | IPR022087 |
| Pfam | PF00412 | LIM domain | 190 | 245 | 2.4E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 217 | 270 | 9.73E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 183 | 215 | 3.32E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 183 | 247 | 2.7E-13 | - |
| SMART | SM00132 | lim_4 | 189 | 241 | 5.7E-12 | IPR001781 |
| SMART | SM00726 | uim | 42 | 61 | 2.1 | IPR003903 |
| SMART | SM00726 | uim | 149 | 168 | 0.84 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 149 | 162 | 9.287983 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 188 | 248 | 11.4247 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 42 | 61 | 8.662196 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 190 | 224 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 44 | - | - |
| Coils | Coil | Coil | 83 | 161 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_006411955.1 | protein DA1-related 1 isoform X1 [Eutrema salsugineum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | V4ML09 | LIM zinc-binding domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024819mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology