Basic Information
Locus ID:
Thhalv10024767m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 979951 | 983804 | + | Thhalv10024767m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 64,507.43 Da | 42.95 | 85.56 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 211 | 442 | 3.3E-73 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 125 | 8.3E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 20 | 125 | 1.1E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 141 | 4.8E-10 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 466 | 76.573547 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 105 | 9.76495 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 497 | - | - |
| Coils | Coil | Coil | 503 | 523 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37590.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_006411871.1 | BTB/POZ domain-containing protein NPY5 [Eutrema salsugineum] | 0 |
| Q0WL52 | Phototropic-responsive NPH3 family protein NPY5 OS=Arabidopsis thaliana OX=3702 GN=NPY5 PE=1 SV=2 | 0 | |
| TrEMBL | V4MAB4 | NPH3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024767mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology