Basic Information
Locus ID:
Thhalv10024732m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
amino acid transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 8219608 | 8223696 | - | Thhalv10024732m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 64,949.41 Da | 28.26 | 102.60 | 0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13520 | Amino acid permease | 74 | 476 | 8.7E-46 | IPR002293 |
| Pfam | PF13906 | C-terminus of AA_permease | 513 | 562 | 1.4E-17 | IPR029485 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 68 | 503 | 7.1E-96 | - |
| PIRSF | PIRSF006060 | AA_transporter | 50 | 511 | 2.7E-69 | - |
| PIRSF | PIRSF006060 | AA_transporter | 458 | 582 | 1100.0 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21120.1 | amino acid transporter 1. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. | 0 |
| RefSeq | XP_006413819.1 | cationic amino acid transporter 1 [Eutrema salsugineum] | 0 |
| Q84MA5 | Cationic amino acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=CAT1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MIS1 | AA_permease_C domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024732mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology