Basic Information
Locus ID:
Thhalv10024678m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 3970926 | 3974309 | + | Thhalv10024678m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 68,752.91 Da | 39.32 | 97.97 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 298 | 549 | 4.6E-33 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 6.1E-13 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 117 | 177 | 1.3E-10 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 278 | 552 | 2.19E-66 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 274 | 8.75E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 208 | 2.0E-54 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 265 | 371 | 2.9E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 372 | 570 | 2.9E-47 | - |
| SMART | SM00220 | serkin_6 | 295 | 551 | 1.5E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 295 | 569 | 28.725248 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 118 | 140 | 7.034293 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 301 | 323 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 414 | 426 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 164 | 177 | 5.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 119 | 132 | 5.8E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30520.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_024005152.1 | LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Eutrema salsugineum] | 0 |
| Q8VYT3 | Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana OX=3702 GN=At4g30520 PE=1 SV=1 | 0 | |
| TrEMBL | V4MMU7 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024678mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology