Basic Information
Locus ID:
Thhalv10024675m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 3546987 | 3550655 | + | Thhalv10024675m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 70,726.93 Da | 58.81 | 71.97 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 167 | 472 | 1.89914E-171 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 168 | 471 | 4.5E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 61 | 98 | 1.1E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 165 | 478 | 1.02E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 57 | 99 | 2.96E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 50 | 101 | 1.8E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 162 | 484 | 8.0E-90 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 61 | 98 | 12.622436 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 168 | 474 | 49.9883 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 169 | 184 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 61 | 98 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 617 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_006412571.1 | ubiquitin carboxyl-terminal hydrolase 18 [Eutrema salsugineum] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | V4MCA0 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024675mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology