Basic Information
Locus ID:
Thhalv10024646m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 9901243 | 9903183 | + | Thhalv10024646m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 74,678.13 Da | 46.78 | 71.78 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 226 | 268 | 1.1E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 55 | 102 | 9.5E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 361 | 411 | 4.7E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 167 | 213 | 8.7E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 114 | 157 | 3.1E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 531 | 575 | 6.8E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 278 | 325 | 4.8E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 474 | 518 | 1.3E-6 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 505 | 582 | 5.13E-18 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 79 | 168 | 3.89E-19 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 26 | 103 | 6.85E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 303 | 418 | 4.65E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 403 | 472 | 5.08E-8 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 195 | 281 | 1.08E-21 | - |
| SMART | SM00109 | c1_12 | 116 | 167 | 0.012 | IPR002219 |
| SMART | SM00109 | c1_12 | 478 | 523 | 3.6 | IPR002219 |
| SMART | SM00109 | c1_12 | 364 | 416 | 3.1 | IPR002219 |
| SMART | SM00109 | c1_12 | 171 | 218 | 0.033 | IPR002219 |
| SMART | SM00109 | c1_12 | 227 | 273 | 3.2 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13992.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_024005644.1 | uncharacterized protein LOC18030447 isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MR52 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024646mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |