Basic Information
Locus ID:
Thhalv10024616m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 9264275 | 9268391 | - | Thhalv10024616m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 74,427.14 Da | 48.26 | 87.98 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 7.4E-12 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 117 | 137 | 0.53 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 69 | 89 | 0.98 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 386 | 634 | 8.5E-17 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 385 | 634 | 3.42E-31 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 166 | 7.65E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 181 | 4.7E-36 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 456 | 648 | 8.0E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 350 | 455 | 1.1E-14 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 335 | 638 | 15.34035 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 302 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18640.1 | Leucine-rich repeat protein kinase family protein. Required for root hair elongation during tip growth. | 0 |
| RefSeq | XP_006414074.1 | protein MALE DISCOVERER 2 [Eutrema salsugineum] | 0 |
| C0LGQ4 | Protein MALE DISCOVERER 2 OS=Arabidopsis thaliana OX=3702 GN=MDIS2 PE=1 SV=1 | 0 | |
| TrEMBL | V4MJF7 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024616mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology