Basic Information
Locus ID:
Thhalv10024605m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 3696930 | 3699682 | + | Thhalv10024605m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 74,673.75 Da | 38.99 | 92.39 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 72 | 2.3E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 362 | 628 | 5.5E-31 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 62 | 236 | 1.11E-27 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 363 | 631 | 4.57E-51 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 435 | 651 | 2.1E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 144 | 236 | 1.3E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 143 | 1.4E-19 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 324 | 434 | 8.1E-19 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 359 | 633 | 28.159887 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 670 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31250.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006412614.1 | probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Eutrema salsugineum] | 0 |
| C0LGR9 | Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana OX=3702 GN=At4g31250 PE=1 SV=1 | 0 | |
| TrEMBL | V4MFP5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024605mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology