Basic Information
Locus ID:
Thhalv10024563m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 7697511 | 7701743 | - | Thhalv10024563m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 75,835.23 Da | 39.22 | 93.69 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 398 | 669 | 5.94192E-87 | - |
| Pfam | PF13516 | Leucine Rich repeat | 92 | 106 | 0.25 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 394 | 666 | 3.2E-44 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 9.4E-10 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 369 | 666 | 2.08E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 22 | 236 | 3.02E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 352 | 469 | 3.6E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 252 | 4.0E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 470 | 693 | 2.3E-57 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 187 | 209 | 7.311519 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 392 | 669 | 37.771008 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 277 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22130.1 | STRUBBELIG-receptor family 8. | 0 |
| RefSeq | XP_006413689.1 | protein STRUBBELIG-RECEPTOR FAMILY 8 [Eutrema salsugineum] | 0 |
| Q6R2J8 | Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana OX=3702 GN=SRF8 PE=1 SV=1 | 0 | |
| TrEMBL | V4MIH0 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024563mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology