Basic Information
Locus ID:
Thhalv10024545m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 1821924 | 1825932 | - | Thhalv10024545m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 80,136.64 Da | 54.51 | 83.70 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 227 | 360 | 1.40588E-68 | - |
| CDD | cd17920 | DEXHc_RecQ | 26 | 226 | 2.50521E-105 | - |
| Pfam | PF16124 | RecQ zinc-binding | 363 | 428 | 9.1E-12 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 207 | 5.3E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 247 | 349 | 7.2E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 372 | 2.22E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 446 | 1.5E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 226 | 1.7E-86 | IPR027417 |
| SMART | SM00490 | helicmild6 | 270 | 351 | 1.1E-22 | IPR001650 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 2.0E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 27 | 439 | 9.9E-140 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 391 | 18.251896 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 22.951847 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 644 | - | - |
| Coils | Coil | Coil | 546 | 566 | - | - |
| Coils | Coil | Coil | 515 | 535 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_006412066.1 | ATP-dependent DNA helicase Q-like 3 [Eutrema salsugineum] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | V4MAZ0 | ATP-dependent DNA helicase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024545mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology