Basic Information
Locus ID:
Thhalv10024532m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
PAS domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 7263472 | 7267261 | - | Thhalv10024532m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 81,004.12 Da | 49.38 | 73.06 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 460 | 706 | 1.70249E-120 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 454 | 705 | 1.3E-63 | IPR001245 |
| Pfam | PF00989 | PAS fold | 82 | 186 | 9.9E-8 | IPR013767 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 435 | 704 | 1.23E-79 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 82 | 192 | 1.19E-15 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 447 | 531 | 2.5E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 533 | 717 | 8.2E-60 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 78 | 220 | 1.3E-18 | - |
| SMART | SM00220 | serkin_6 | 454 | 710 | 3.0E-58 | IPR000719 |
| SMART | SM00091 | pas_2 | 80 | 148 | 8.5E-4 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 81 | 192 | 1.6E-10 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 78 | 150 | 9.813698 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 454 | 710 | 43.127792 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 460 | 481 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 573 | 585 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 633 | 655 | 2.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 528 | 541 | 2.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 677 | 699 | 2.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 567 | 585 | 2.4E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 614 | 624 | 2.4E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 400 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23050.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_006413585.1 | dual specificity protein kinase shkE [Eutrema salsugineum] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | V4MPS8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024532mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology