Basic Information
Locus ID:
Thhalv10024494m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 5677453 | 5681104 | + | Thhalv10024494m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 82,414.64 Da | 38.17 | 89.72 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 41 | 340 | 5.37075E-180 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 357 | 658 | 2.76064E-176 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 363 | 652 | 2.3E-24 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 40 | 338 | 8.63E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 357 | 658 | 3.14E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 340 | 1.4E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 357 | 659 | 4.0E-42 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 357 | 659 | 43.066639 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 41 | 341 | 40.02972 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 734 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_006413151.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Eutrema salsugineum] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | V4MDU2 | glycerophosphodiester phosphodiesterase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024494mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology