Basic Information
Locus ID:
Thhalv10024407m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ATP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 5188539 | 5193043 | - | Thhalv10024407m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 92,984.63 Da | 54.24 | 85.10 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 555 | 688 | 2.24933E-23 | - |
| Pfam | PF17862 | AAA+ lid domain | 709 | 747 | 1.9E-10 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 557 | 687 | 4.8E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 517 | 755 | 1.34E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 516 | 688 | 1.7E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 689 | 764 | 1.7E-94 | - |
| SMART | SM00382 | AAA_5 | 553 | 690 | 6.5E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 660 | 679 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 219 | - | - |
| Coils | Coil | Coil | 742 | 776 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.2 | - | 0 |
| RefSeq | XP_006413006.1 | putative cell division cycle ATPase isoform X1 [Eutrema salsugineum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | V4MDB9 | AAA domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024407mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology