Basic Information
Locus ID:
Thhalv10024366m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Has 114836 Blast hits to 56273 proteins in 1914 species Archae - 187
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 3440880 | 3446562 | + | Thhalv10024366m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 96,225.27 Da | 54.71 | 56.79 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 611 | 652 | 1.13E-6 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 17 | 230 | 9.12E-8 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 602 | 660 | 4.4E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 888 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 812 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 862 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 389 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_006412540.1 | altered inheritance of mitochondria protein 21 isoform X3 [Eutrema salsugineum] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | V4MMH8 | Neurofilament heavy polypeptide-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024366mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology