Basic Information
Locus ID:
Thhalv10024324m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 7953522 | 7959195 | - | Thhalv10024324m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 108,289.42 Da | 62.00 | 77.93 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 210 | 375 | 6.88916E-23 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 855 | 918 | 2.8E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 265 | 374 | 1.9E-6 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 723 | 787 | 4.8E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 148 | 399 | 3.45E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 853 | 928 | 7.61E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 146 | 421 | 4.9E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 721 | 796 | 6.0E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 854 | 924 | 2.1E-7 | - |
| SMART | SM00577 | forpap2 | 208 | 384 | 8.1E-27 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 854 | 922 | 3.3E-6 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 724 | 788 | 4.6E-6 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 723 | 789 | 11.188538 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 853 | 923 | 11.38275 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 149 | 399 | 15.350014 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 963 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 690 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_006413749.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Eutrema salsugineum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MIM3 | protein-serine/threonine phosphatase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024324mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology