Basic Information
Locus ID:
Thhalv10024310m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 8460221 | 8463543 | - | Thhalv10024310m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 110,669.91 Da | 36.48 | 104.23 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 76 | 9.3E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 300 | 322 | 0.085 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 252 | 274 | 1.8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 203 | 223 | 0.79 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 716 | 985 | 2.9E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 703 | 987 | 5.47E-73 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 267 | 624 | 8.24E-63 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 60 | 236 | 2.04E-37 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 708 | 791 | 1.0E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 362 | 638 | 1.3E-78 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 147 | 240 | 5.2E-26 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 792 | 995 | 6.5E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 146 | 3.3E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 241 | 361 | 4.8E-34 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 346 | 370 | 82.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 493 | 517 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 541 | 565 | 230.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 714 | 996 | 1.0E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 298 | 322 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 469 | 492 | 81.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 274 | 297 | 90.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 250 | 273 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 128 | 152 | 18.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 543 | 565 | 7.049695 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 714 | 996 | 37.149113 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 300 | 323 | 7.1036 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 836 | 848 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 469 | 482 | 9.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 373 | 386 | 9.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_006413888.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Eutrema salsugineum] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | V4P6Y8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024310mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology