Basic Information
Locus ID:
Thhalv10024307m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase 16-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 6601658 | 6607169 | + | Thhalv10024307m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 109,978.35 Da | 54.75 | 72.96 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 538 | 841 | 7.4E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 74 | 111 | 3.8E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 71 | 114 | 4.36E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 534 | 848 | 5.69E-85 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 67 | 115 | 1.3E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 531 | 849 | 5.2E-90 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 74 | 111 | 11.680447 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 538 | 844 | 48.815258 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 74 | 111 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 539 | 554 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 985 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1001 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_006413415.1 | ubiquitin carboxyl-terminal hydrolase 16 [Eutrema salsugineum] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | V4MPB8 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024307mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology