Basic Information
Locus ID:
Thhalv10024302m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 4927477 | 4930811 | + | Thhalv10024302m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 110,393.30 Da | 30.81 | 103.34 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 68 | 2.6E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 525 | 584 | 2.7E-8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 167 | 187 | 0.4 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 701 | 973 | 5.1E-47 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 284 | 299 | 0.45 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 693 | 976 | 1.24E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 381 | 515 | 1.65E-28 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 69 | 133 | 4.39E-7 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 144 | 589 | 2.98E-64 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 137 | 3.6E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 249 | 308 | 1.2E-18 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 784 | 1003 | 1.1E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 309 | 620 | 2.2E-87 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 699 | 783 | 2.2E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 138 | 248 | 2.1E-31 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 187 | 211 | 82.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 699 | 976 | 4.7E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 259 | 283 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 331 | 355 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 163 | 186 | 65.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 547 | 571 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 427 | 451 | 63.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 699 | 983 | 38.732121 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 827 | 839 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 705 | 729 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 502 | 515 | 2.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 547 | 560 | 2.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 990 | 1013 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 1013 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28650.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_006412927.2 | MDIS1-interacting receptor like kinase 1 [Eutrema salsugineum] | 0 |
| Q9M0G7 | MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LUQ8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024302mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology