Basic Information
Locus ID:
Thhalv10024263m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 10956474 | 10964252 | - | Thhalv10024263m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 123,972.74 Da | 41.72 | 78.53 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 480 | 0.0071 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 906 | 940 | 0.0022 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 512 | 1089 | 4.39E-40 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 344 | 654 | 8.25E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 324 | 570 | 4.6E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 571 | 699 | 1.3E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 958 | 1100 | 2.8E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 748 | 957 | 2.4E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 814 | 855 | 51.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 439 | 480 | 0.0077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 990 | 1032 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1054 | 1086 | 400.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 434 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 572 | 612 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 523 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 858 | 898 | 2.2 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.4E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 526 | 569 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 901 | 940 | 1.8E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 0.0022 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 908 | 943 | 10.179234 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.864343 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 590 | 621 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 908 | 949 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.453111 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 467 | 481 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1093 | 1120 | - | - |
| Coils | Coil | Coil | 1115 | 1120 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_006414395.1 | topless-related protein 2 isoform X1 [Eutrema salsugineum] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | V4MRL0 | Topless-related protein 2 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024263mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology