Basic Information
Locus ID:
Thhalv10024250m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 9048395 | 9054749 | - | Thhalv10024250m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 134,352.09 Da | 46.20 | 72.00 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 474 | 591 | 3.03845E-59 | - |
| CDD | cd18635 | CD_CMT3_like | 733 | 788 | 5.46003E-31 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 797 | 1158 | 9.1E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 476 | 587 | 1.1E-13 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 733 | 785 | 5.3E-10 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 724 | 786 | 3.23E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 623 | 1158 | 4.46E-75 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 951 | 1124 | 1.2E-236 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 413 | 575 | 4.2E-46 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 626 | 1175 | 1.2E-236 | - |
| SMART | SM00439 | BAH_4 | 475 | 590 | 6.7E-29 | IPR001025 |
| SMART | SM00298 | chromo_7 | 732 | 791 | 3.3E-12 | IPR000953 |
| PIRSF | PIRSF037404 | DNMT1 | 605 | 695 | 1.6E-5 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 68 | 352 | 4000.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 427 | 612 | 7.0E-7 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 777 | 1055 | 1.0E-37 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 1080 | 1176 | 1.7E-15 | IPR017198 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 733 | 786 | 13.046201 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 624 | 1165 | 45.868088 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 475 | 590 | 20.148237 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 846 | 860 | 5.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 625 | 641 | 5.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 892 | 905 | 5.5E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 728 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_006414021.2 | DNA (cytosine-5)-methyltransferase CMT2 [Eutrema salsugineum] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | V4MG42 | DNA (cytosine-5-)-methyltransferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024250mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology