Basic Information
Locus ID:
Thhalv10024240m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 340928 | 345720 | + | Thhalv10024240m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 136,434.23 Da | 34.15 | 91.15 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 317 | 2.44173E-75 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.4E-7 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 815 | 1216 | 3.9E-172 | IPR010714 |
| Pfam | PF04053 | Coatomer WD associated region | 340 | 768 | 8.4E-132 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 1.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 6.9E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 211 | 291 | 5.6E-5 | IPR024977 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 245 | 587 | 3.14E-16 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 315 | 3.4E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 319 | 1.9E-124 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 640 | 812 | 4.6E-63 | - |
| SMART | SM00320 | WD40_4 | 40 | 79 | 7.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 44.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 317 | 77.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 1.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 5.7E-11 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1212 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.683765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.387508 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 276 | 12.156496 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 3.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 3.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 3.9E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_006411704.1 | coatomer subunit alpha-1 [Eutrema salsugineum] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | V4MD98 | Coatomer subunit alpha OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024240mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology