Basic Information
Locus ID:
Thhalv10024198m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 2818831 | 2827635 | + | Thhalv10024198m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 195,837.72 Da | 46.66 | 74.86 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1455 | 1718 | 1.50101E-144 | IPR044769 |
| CDD | cd15725 | FYVE_PIKfyve_Fab1 | 32 | 99 | 1.92486E-33 | - |
| CDD | cd03334 | Fab1_TCP | 378 | 650 | 6.98288E-136 | - |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 401 | 645 | 1.2E-32 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1494 | 1660 | 5.0E-33 | IPR002498 |
| Pfam | PF01363 | FYVE zinc finger | 33 | 101 | 1.9E-18 | IPR000306 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 444 | 616 | 5.49E-42 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1449 | 1718 | 5.89E-77 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 31 | 102 | 3.31E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 106 | 1.8E-21 | IPR013083 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1408 | 1575 | 5.1E-36 | IPR027484 |
| Gene3D | G3DSA:3.30.810.10 | - | 1578 | 1719 | 3.9E-41 | - |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 443 | 616 | 2.3E-54 | IPR027409 |
| SMART | SM00064 | fyve_4 | 28 | 103 | 3.7E-22 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1428 | 1719 | 1.0E-141 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 36 | 102 | 13.183241 | IPR017455 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1393 | 1718 | 57.030888 | IPR002498 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1732 | 1756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1252 | 1273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1153 | 1174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 194 | - | - |
| Coils | Coil | Coil | 1064 | 1084 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33240.2 | 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_006412375.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A [Eutrema salsugineum] | 0 |
| Q0WUR5 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A OS=Arabidopsis thaliana OX=3702 GN=FAB1A PE=1 SV=1 | 0 | |
| TrEMBL | V4MLZ9 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024198mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology