Basic Information
Locus ID:
Thhalv10024192m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 160803 | 169272 | + | Thhalv10024192m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 202,266.48 Da | 47.25 | 85.98 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1466 | 1879 | 2.16503E-122 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1513 | 1884 | 3.6E-81 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 186 | 646 | 1.84E-41 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1458 | 1877 | 4.97E-94 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 176 | 494 | 1.3E-51 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1756 | 1882 | 1.6E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1407 | 1645 | 1.1E-44 | - |
| SMART | SM00185 | arm_5 | 218 | 259 | 44.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 344 | 382 | 9.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 301 | 341 | 61.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1477 | 1884 | 4.5E-86 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1490 | 1884 | 55.854828 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1272 | 1298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 1010 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_006411652.1 | E3 ubiquitin-protein ligase UPL3 [Eutrema salsugineum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LRA0 | HECT-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024192mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology