Basic Information
Locus ID:
Thhalv10024176m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_1 | 10215584 | 10239664 | + | Thhalv10024176m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 466,309.69 Da | 46.22 | 88.52 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16910 | Repeating coiled region of VPS13 | 561 | 782 | 1.1E-34 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 108 | 2.4E-31 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3135 | 3300 | 7.5E-10 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1933 | 2086 | 1.7E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2154 | 2301 | 3.4E-9 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 1.1E-61 | IPR031646 |
| SUPERFAMILY | SSF50729 | PH domain-like | 796 | 875 | 2.34E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 904 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.2 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_024004310.1 | uncharacterized protein LOC18029459 isoform X1 [Eutrema salsugineum] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | V4LYH2 | PH domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024176mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology