Basic Information
Locus ID:
Thhalv10024116m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 3245527 | 3247061 | - | Thhalv10024116m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 15,442.83 Da | 23.74 | 103.85 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 20 | 50 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 102 | 135 | 2.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 134 | 6.41E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 135 | 2.9E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 99 | 135 | 0.0028 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 51 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 18 | 50 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 135 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 106 | 135 | 11.5765 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_010547320.1 | PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X5 [Tarenaya hassleriana] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | V4KHJ6 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024116mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128360 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl04549, Sgl09595, Sgl15470, Sgl22341, Sgl27592, Sgl44438 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000012172 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023689m.g.v1.0, Thhalv10024116m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB05g063820.2N |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0526s00007.v1.0, Dusal.0840s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g03560 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G013900 |
| Poaceae | Zea mays | 4 | Zm00001eb054750_P001, Zm00001eb356040_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31254, nbis-gene-45313 |