Basic Information
Locus ID:
Thhalv10024060m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 7073633 | 7074310 | - | Thhalv10024060m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 26,607.04 Da | 34.70 | 78.84 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 44 | 9.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 119 | 2.35E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 42 | 1.1E-5 | - |
| SMART | SM00256 | fbox_2 | 6 | 46 | 4.8E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 93 | 217 | 2.0E-12 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58090.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_024014339.1 | LOW QUALITY PROTEIN: putative F-box protein At1g58090 [Eutrema salsugineum] | 0 |
| Q9C6F7 | Putative F-box protein At1g58090 OS=Arabidopsis thaliana OX=3702 GN=At1g58090 PE=4 SV=1 | 0 | |
| TrEMBL | V4JW34 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024060mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |