halophFGD

Basic Information

Locus ID: Thhalv10024039m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: Mitochondrial transcription termination factor family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_8	1731143	1732424	+	Thhalv10024039m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.35	40,943.78 Da	55.65	96.04	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02536	mTERF	125	358	9.9E-63	IPR003690
Pfam	PF02536	mTERF	71	123	7.0E-11	IPR003690
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	33	361	5.2E-47	IPR038538
SMART	SM00733	mt_12	85	116	190.0	IPR003690
SMART	SM00733	mt_12	203	233	2.1E-4	IPR003690
SMART	SM00733	mt_12	273	304	150.0	IPR003690
SMART	SM00733	mt_12	238	268	2.1E-4	IPR003690
SMART	SM00733	mt_12	305	339	0.1	IPR003690

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003690 (double-stranded DNA binding)

KEGG Pathway

KO Term:

K15032 (NOT_FOUND)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G61980.1	Mitochondrial transcription termination factor family protein.
RefSeq	XP_024015433.1	transcription termination factor MTERF4, chloroplastic [Eutrema salsugineum]
TrEMBL	V4KH29	Mitochodrial transcription termination factor OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10024039mg PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	13	AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... AT1G61990.1, AT1G62010.1, AT1G62085.1, AT1G62110.1, AT1G62120.1, AT1G62150.1, AT1G62490.1, AT3G46950.1, AT5G23930.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... Thhalv10022427m.g.v1.0, Thhalv10023445m.g.v1.0, Thhalv10023447m.g.v1.0, Thhalv10023457m.g.v1.0, Thhalv10023461m.g.v1.0, Thhalv10023467m.g.v1.0, Thhalv10023470m.g.v1.0, Thhalv10023472m.g.v1.0, Thhalv10023505m.g.v1.0, Thhalv10023801m.g.v1.0, Thhalv10023838m.g.v1.0, Thhalv10023868m.g.v1.0, Thhalv10023911m.g.v1.0, Thhalv10023915m.g.v1.0, Thhalv10024025m.g.v1.0, Thhalv10024039m.g.v1.0, Thhalv10024041m.g.v1.0, Thhalv10024076m.g.v1.0, Thhalv10024090m.g.v1.0, Thhalv10024124m.g.v1.0, Thhalv10024133m.g.v1.0, Thhalv10024167m.g.v1.0
Brassicaceae	Schrenkiella parvula	14	Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... Sp2g02560.v2.2, Sp2g02570.v2.2, Sp2g02580.v2.2, Sp2g02590.v2.2, Sp2g02600.v2.2, Sp2g02610.v2.2, Sp2g23340.v2.2, Sp3g04430.v2.2, Sp3g28660.v2.2, Sp5g14790.v2.2, Sp7g03520.v2.2
Brassicaceae	Brassica nigra	12	BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... BniB02g058870.2N, BniB02g059080.2N, BniB02g059110.2N, BniB04g019510.2N, BniB04g021090.2N, BniB04g021110.2N, BniB04g021360.2N, BniB07g047770.2N, BniB08g059690.2N