Basic Information
Locus ID:
Thhalv10023870m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein At3g23950
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 4669596 | 4670167 | - | Thhalv10023870m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 19,469.64 Da | 36.09 | 97.84 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23950.1 | F-box family protein. | 0 |
| RefSeq | XP_010456920.1 | PREDICTED: putative F-box protein At3g23950 [Camelina sativa] | 0 |
| Q9LIR3 | Putative F-box protein At3g23950 OS=Arabidopsis thaliana OX=3702 GN=At3g23950 PE=4 SV=1 | 0 | |
| TrEMBL | V4KI12 | HTH_Tnp_IS630 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023870mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 10 | AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... |
| Brassicaceae | Brassica nigra | 20 | BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032378 |