halophFGD

Basic Information

Locus ID: Thhalv10023848m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: Arginine and glutamate-rich 1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_8	276442	277686	-	Thhalv10023848m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.77	48,025.62 Da	38.86	87.32	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	209	402	5.1E-54	IPR006527
Pfam	PF00646	F-box domain	4	38	6.4E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	1	141	1.14E-13	IPR036047
SMART	SM00256	fbox_2	7	47	0.0012	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	101	347	1.7E-43	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K13173 (arginine and glutamate-rich protein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G20030.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_006391637.1	putative F-box protein At3g20030 [Eutrema salsugineum]
Swiss-Prot	Q9LJZ8	Putative F-box protein At3g20030 OS=Arabidopsis thaliana OX=3702 GN=At3g20030 PE=4 SV=1
TrEMBL	V4KNL3	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023848mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N