Basic Information
Locus ID:
Thhalv10023843m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 3469366 | 3469727 | - | Thhalv10023843m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 11,741.01 Da | 38.55 | 113.40 | 0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 59 | 85 | 5.9E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 59 | 102 | 7.42E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 102 | 2.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 59 | 99 | 9.435407 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28920.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024013276.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF149 [Eutrema salsugineum] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | V4KDY5 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023843mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009927m.g.v1.0, Thhalv10023843m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g06310.v2.2, Sp4g11730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014960.2N, BniB03g002300.2N |