Basic Information
Locus ID:
Thhalv10023838m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 1714052 | 1715467 | + | Thhalv10023838m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 53,016.34 Da | 37.06 | 94.56 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 95 | 439 | 2.1E-114 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 65 | 255 | 1.1E-15 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 256 | 449 | 2.4E-46 | IPR038538 |
| SMART | SM00733 | mt_12 | 354 | 385 | 0.25 | IPR003690 |
| SMART | SM00733 | mt_12 | 145 | 177 | 210.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 249 | 279 | 3.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 386 | 420 | 0.069 | IPR003690 |
| SMART | SM00733 | mt_12 | 284 | 314 | 1.6E-5 | IPR003690 |
| SMART | SM00733 | mt_12 | 109 | 140 | 21.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 319 | 349 | 0.066 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62120.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_006391858.2 | transcription termination factor MTERF15, mitochondrial isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4KDF0 | Mitochondrial transcription termination factor family protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023838mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |