Basic Information
Locus ID:
Thhalv10023801m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 2236571 | 2237964 | + | Thhalv10023801m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 47,568.28 Da | 43.76 | 92.73 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 111 | 388 | 1.2E-68 | IPR003690 |
| Pfam | PF02536 | mTERF | 55 | 111 | 9.9E-13 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 169 | 398 | 3.5E-38 | IPR038538 |
| SMART | SM00733 | mt_12 | 69 | 101 | 0.011 | IPR003690 |
| SMART | SM00733 | mt_12 | 332 | 366 | 0.13 | IPR003690 |
| SMART | SM00733 | mt_12 | 187 | 217 | 4.9 | IPR003690 |
| SMART | SM00733 | mt_12 | 257 | 287 | 0.99 | IPR003690 |
| SMART | SM00733 | mt_12 | 292 | 322 | 2.8 | IPR003690 |
| SMART | SM00733 | mt_12 | 222 | 252 | 0.09 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62085.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_013691180.2 | uncharacterized protein LOC106395215 [Brassica napus] | 0 |
| TrEMBL | V4JV00 | Mitochodrial transcription termination factor-related protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023801mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |