Basic Information
Locus ID:
Thhalv10023694m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 2029679 | 2030826 | - | Thhalv10023694m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 22,840.60 Da | 44.57 | 73.35 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 158 | 195 | 2.70727E-7 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 157 | 200 | 1.6E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 202 | 1.79E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 205 | 3.3E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 195 | 1.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 196 | 10.733671 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006391898.1 | uncharacterized protein LOC18009947 [Eutrema salsugineum] | 0 |
| TrEMBL | V4KDI8 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023694mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology