Basic Information
Locus ID:
Thhalv10023522m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 4917586 | 4918800 | + | Thhalv10023522m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 43,962.74 Da | 49.41 | 81.85 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49990.1 | F-box family protein. | 0 |
| RefSeq | XP_013669198.2 | F-box protein At1g49990-like [Brassica napus] | 0 |
| Q9LPM2 | F-box protein At1g49990 OS=Arabidopsis thaliana OX=3702 GN=At1g49990 PE=2 SV=1 | 0 | |
| TrEMBL | V4KI18 | DUF1618 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023522mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 10 | AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... |
| Brassicaceae | Brassica nigra | 20 | BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032378 |