Basic Information
Locus ID:
Thhalv10023443m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 8998667 | 9002348 | - | Thhalv10023443m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 51,984.33 Da | 62.77 | 58.16 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 333 | 416 | 3.9E-19 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 433 | 464 | 8.6E-8 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 332 | 417 | 1.7E-27 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 107 | - | - |
| Coils | Coil | Coil | 370 | 390 | - | - |
| Coils | Coil | Coil | 338 | 358 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_006392422.1 | uncharacterized protein LOC18010361 isoform X2 [Eutrema salsugineum] | 0 |
| TrEMBL | V4KQT3 | PAPA-1 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023443mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology