Basic Information
Locus ID:
Thhalv10023275m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 391811 | 396268 | + | Thhalv10023275m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 92,804.64 Da | 41.81 | 86.12 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 555 | 688 | 6.12711E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 710 | 750 | 6.1E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 557 | 687 | 6.4E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 367 | 5.85E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 516 | 764 | 1.42E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 515 | 798 | 8.8E-98 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 689 | 790 | 8.8E-98 | - |
| SMART | SM00382 | AAA_5 | 553 | 690 | 6.0E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 660 | 679 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 496 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_024003729.1 | spastin [Eutrema salsugineum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | V4KNN8 | AAA domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023275mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology