Basic Information
Locus ID:
Thhalv10023272m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zn-finger in Ran binding protein and others
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 10056398 | 10060349 | - | Thhalv10023272m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 94,083.26 Da | 59.47 | 51.72 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 400 | 427 | 1.5E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 366 | 394 | 3.3E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 359 | 395 | 1.57E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 397 | 428 | 6.6E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 358 | 396 | 6.7E-17 | - |
| SMART | SM00547 | zf_4 | 368 | 392 | 2.1E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 401 | 425 | 0.06 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 399 | 428 | 9.325869 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 366 | 395 | 10.116323 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 403 | 422 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 370 | 389 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 107 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_006392464.1 | uncharacterized protein LOC18009555 [Eutrema salsugineum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | V4JWC8 | Zinc finger protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023272mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology