Basic Information
Locus ID:
Thhalv10023227m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 3097119 | 3104581 | - | Thhalv10023227m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 123,672.00 Da | 53.63 | 80.59 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 297 | 2.25704E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 69 | 104 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 111 | 146 | 1.2E-6 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 966 | 1124 | 3.2E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 152 | 186 | 1.7E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 297 | 8.47E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 185 | 335 | 9.7E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 184 | 1.2E-41 | IPR015943 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.071 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 216 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 188 | 1.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 146 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 257 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 65 | 104 | 0.041 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 225 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 72 | 106 | 10.126507 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 184 | 219 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 156 | 186 | 9.09833 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 72 | 113 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 148 | 12.420132 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 155 | 15.821944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 156 | 186 | 10.842632 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 133 | 147 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 203 | 217 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 31 | 45 | 7.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 203 | 217 | 7.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 133 | 147 | 7.9E-6 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 1127 | 17.820614 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 792 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_024004100.1 | LOW QUALITY PROTEIN: katanin p80 WD40 repeat-containing subunit B1 homolog [Eutrema salsugineum] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | V4MDJ6 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023227mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology