Basic Information
Locus ID:
Thhalv10023226m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 3590783 | 3597713 | + | Thhalv10023226m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 128,697.59 Da | 46.01 | 81.86 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 454 | 653 | 3.03972E-103 | - |
| CDD | cd18794 | SF2_C_RecQ | 654 | 786 | 1.46356E-73 | - |
| Pfam | PF16124 | RecQ zinc-binding | 788 | 867 | 2.7E-14 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 670 | 776 | 2.0E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 465 | 633 | 6.0E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1030 | 1096 | 2.2E-14 | IPR002121 |
| Pfam | PF09382 | RQC domain | 876 | 989 | 5.3E-21 | IPR018982 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1028 | 1101 | 5.23E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 434 | 795 | 4.19E-41 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 652 | 919 | 5.32E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 654 | 870 | 5.4E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 426 | 653 | 7.9E-90 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 875 | 985 | 2.4E-19 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1021 | 1108 | 1.1E-20 | IPR044876 |
| SMART | SM00490 | helicmild6 | 696 | 777 | 8.2E-28 | IPR001650 |
| SMART | SM00956 | RQC_2 | 877 | 988 | 8.8E-30 | IPR018982 |
| SMART | SM00487 | ultradead3 | 459 | 662 | 3.1E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 455 | 928 | 1.2E-163 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 471 | 646 | 22.85125 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 667 | 728 | 8.86536 | IPR001763 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1024 | 1106 | 18.453907 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 671 | 816 | 19.785553 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 585 | 594 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1148 | - | - |
| Coils | Coil | Coil | 329 | 356 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_006392095.1 | ATP-dependent DNA helicase Q-like 4B [Eutrema salsugineum] | 0 |
| Q9FT70 | ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana OX=3702 GN=RECQL4B PE=2 SV=1 | 0 | |
| TrEMBL | V4MDR0 | DNA helicase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023226mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology