Basic Information
Locus ID:
Thhalv10023220m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ATP binding DNA binding helicase nucleic acid binding protein binding zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_8 | 3273975 | 3280484 | + | Thhalv10023220m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 145,212.20 Da | 51.76 | 70.48 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 615 | 935 | 6.82291E-84 | - |
| CDD | cd18793 | SF2_C_SNF | 1114 | 1272 | 6.03383E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 635 | 1012 | 1.1E-69 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1163 | 1262 | 9.3E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 605 | 935 | 1.3E-46 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 944 | 1319 | 2.66E-57 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1036 | 1085 | 2.05E-9 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 707 | 797 | 1.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 588 | 675 | 1.2E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 804 | 948 | 1.2E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 950 | 1321 | 4.1E-66 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1028 | 1091 | 1.6E-9 | IPR013083 |
| SMART | SM00490 | helicmild6 | 1179 | 1262 | 1.6E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 611 | 912 | 2.5E-31 | IPR014001 |
| SMART | SM00184 | ring_2 | 1041 | 1079 | 0.002 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1041 | 1080 | 9.848491 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 630 | 897 | 12.854284 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1156 | 1315 | 14.965492 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 809 | 828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 830 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_024013259.1 | LOW QUALITY PROTEIN: helicase-like transcription factor CHR28 [Eutrema salsugineum] | 0 |
| Q9LHE4 | Helicase-like transcription factor CHR27 OS=Arabidopsis thaliana OX=3702 GN=CHR27 PE=1 SV=1 | 0 | |
| TrEMBL | V4JVA9 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023220mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology