Basic Information
Locus ID:
Thhalv10023119m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 5955754 | 5956711 | - | Thhalv10023119m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 21,868.12 Da | 49.36 | 91.18 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 122 | 175 | 5.1E-15 | IPR013187 |
| Pfam | PF00646 | F-box domain | 2 | 38 | 1.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 59 | 4.84E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 34 | 3.3E-6 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 62 | 175 | 1.3E-25 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 38 | 8.861604 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62060.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006394334.2 | putative F-box protein At1g32420 [Eutrema salsugineum] | 0 |
| Q9FIT3 | Putative F-box protein At5g62060 OS=Arabidopsis thaliana OX=3702 GN=At5g62060 PE=4 SV=1 | 0 | |
| TrEMBL | V4LKH3 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023119mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G52490.1, AT3G56670.1, AT5G50220.1, AT5G62060.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10002240m.g.v1.0, Thhalv10005381m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03180.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g016620.2N, BniB01g016630.2N, BniB01g027720.2N ... |