Basic Information
Locus ID:
Thhalv10023098m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
CDPK-related kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 1860907 | 1863338 | - | Thhalv10023098m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 28,181.76 Da | 30.26 | 90.04 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 31 | 229 | 2.1E-52 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 29 | 230 | 2.83E-61 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 24 | 243 | 2.9E-62 | - |
| SMART | SM00220 | serkin_6 | 31 | 249 | 2.5E-51 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 31 | 250 | 42.364559 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 155 | 167 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 37 | 63 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24430.1 | Calcium-dependent protein kinase (CDPK) family protein. | 0 |
| RefSeq | XP_024016575.1 | CDPK-related kinase 4 [Eutrema salsugineum] | 0 |
| Q9FIM9 | CDPK-related kinase 4 OS=Arabidopsis thaliana OX=3702 GN=CRK4 PE=1 SV=1 | 0 | |
| TrEMBL | V4LJN0 | Protein kinase domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023098mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011937m.g.v1.0, Thhalv10023098m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | SpUn0190_0010.v2.2 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04062 |
| Poaceae | Zea mays | 2 | Zm00001eb085930_P001, Zm00001eb233750_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32968, nbis-gene-57804 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107027768, gene-LOC114075599 |