halophFGD

Basic Information

Locus ID: Thhalv10023095m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Short Name: TPX1

Description: peroxiredoxin activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_11	2273298	2274417	+	Thhalv10023095m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.93	41,758.55 Da	40.08	93.03	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	4	34	9.6E-6	IPR001810
Pfam	PF07734	F-box associated	174	350	1.3E-45	IPR006527
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	61	269	3.01E-5	IPR011043
SUPERFAMILY	SSF81383	F-box domain	3	34	7.46E-5	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	77	304	3.1E-36	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G49510.1	F-box family protein.
RefSeq	XP_024016186.1	LOW QUALITY PROTEIN: F-box protein At3g49510 [Eutrema salsugineum]
Swiss-Prot	Q9CA02	F-box protein At3g49510 OS=Arabidopsis thaliana OX=3702 GN=At3g49510 PE=2 SV=1
TrEMBL	V4ME46	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023095mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N