Basic Information
Locus ID:
Thhalv10023084m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
TPx1
Description:
peroxiredoxin activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 1231522 | 1233513 | + | Thhalv10023084m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 25,820.87 Da | 43.32 | 98.18 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 48 | 84 | 3.9E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 48 | 168 | 7.98E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 44 | 90 | 7.1E-8 | - |
| SMART | SM00256 | fbox_2 | 51 | 91 | 2.5E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 45 | 100 | 11.537539 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24800.1 | F-box family protein. | 0 |
| RefSeq | XP_020866580.1 | LOW QUALITY PROTEIN: F-box/kelch-repeat protein At1g24800-like [Arabidopsis lyrata subsp. lyrata] | 0 |
| P0DI02 | F-box/kelch-repeat protein At1g24800 OS=Arabidopsis thaliana OX=3702 GN=At1g24800 PE=2 SV=1 | 0 | |
| TrEMBL | V4LJH9 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023084mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 24 | AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... |
| Brassicaceae | Eutrema salsugineum | 15 | Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g11150.v2.2, Sp3g32750.v2.2 |
| Brassicaceae | Brassica nigra | 13 | BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... |