HalophFGD

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Basic Information
Locus ID: Thhalv10023029m.g.v1.0
Species & Taxonomic ID: Eutrema salsugineum & 72664
Genome Assembly: GCF_000478725.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
scaffold_11 1791016 1791315 + Thhalv10023029m.g.v1.0
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.62 11,396.59 Da 47.08 137.68 0.62
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 8 41 1.8E-6 IPR001810
SUPERFAMILY SSF81383 F-box domain 3 50 1.44E-11 IPR036047
Gene3D G3DSA:1.20.1280.50 - 1 43 2.1E-7 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G26350.1 F-box/RNI-like/FBD-like domains-containing protein. 0
RefSeq XP_018468941.1 PREDICTED: probable FBD-associated F-box protein At1g32375 [Raphanus sativus] 0
Swiss-Prot Q9STQ0 Putative F-box/FBD/LRR-repeat protein At4g26350 OS=Arabidopsis thaliana OX=3702 GN=At4g26350 PE=4 SV=1 0
TrEMBL V4ME12 F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023029mg PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Brassicaceae Eutrema salsugineum 1 Thhalv10023029m.g.v1.0
Brassicaceae Brassica nigra 1 BniB02g035220.2N
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