Basic Information
Locus ID:
Thhalv10023006m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 7582965 | 7585552 | - | Thhalv10023006m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 70,214.02 Da | 37.52 | 89.62 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 207 | 464 | 2.2E-88 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 24 | 117 | 5.8E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 117 | 1.33E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 5 | 121 | 9.5E-14 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 8.813578 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 207 | 488 | 86.689819 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 633 | - | - |
| Coils | Coil | Coil | 530 | 550 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_006409633.1 | BTB/POZ domain-containing protein NPY2 [Eutrema salsugineum] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | V4NW78 | Phototropic-responsive NPH3 family protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023006mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology