Basic Information
Locus ID:
Thhalv10022705m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 2785324 | 2787533 | + | Thhalv10022705m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 46,808.54 Da | 33.27 | 76.31 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 246 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 251 | 289 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 333 | 6.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 356 | 391 | 0.0042 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 18 | 87 | 1.5E-21 | IPR022052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 113 | 396 | 5.66E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 415 | 1.9E-129 | IPR015943 |
| SMART | SM00320 | WD40_4 | 352 | 392 | 6.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 289 | 9.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 333 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 197 | 3.0E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 206 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 300 | 335 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 256 | 291 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 213 | 251 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 359 | 393 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 300 | 335 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 213 | 255 | 12.079106 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 320 | 334 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 184 | 198 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 276 | 290 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 320 | 334 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 184 | 198 | 1.5E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_006409391.1 | WD-40 repeat-containing protein MSI2 [Eutrema salsugineum] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | V4M3Q0 | CAF1C_H4-bd domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022705mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology