Basic Information
Locus ID:
Thhalv10022701m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
DNA repair protein recA homolog 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 49746 | 52833 | - | Thhalv10022701m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 45,379.44 Da | 38.64 | 92.67 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 57 | 382 | 6.37094E-165 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 61 | 324 | 7.7E-119 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 59 | 324 | 2.11E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 326 | 380 | 2.09E-7 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 88 | 391 | 8.8E-110 | IPR027417 |
| SMART | SM00382 | AAA_5 | 111 | 285 | 1.2E-7 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 58 | 379 | 8.4E-137 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 258 | 329 | 25.782604 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 89 | 248 | 38.589825 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 270 | 278 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 147 | 176 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 353 | 370 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 181 | 210 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 267 | 295 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 219 | 248 | 1.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 300 | 329 | 1.7E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 58 | 385 | 43.217815 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 414 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_006409044.1 | DNA repair protein recA homolog 3, mitochondrial [Eutrema salsugineum] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | V4M6A4 | DNA repair protein recA homolog 3, mitochondrial-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022701mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology