Basic Information
Locus ID:
Thhalv10022678m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 2303176 | 2305773 | + | Thhalv10022678m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 53,074.92 Da | 42.54 | 79.51 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 58 | 198 | 1.9E-16 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 27 | 294 | 1.73E-32 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 358 | 464 | 3.29E-14 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 14 | 119 | 8.5E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 121 | 293 | 4.6E-24 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 356 | 466 | 5.8E-16 | IPR011990 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 44 | 285 | 10.506522 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17090.1 | Protein kinase protein with tetratricopeptide repeat domain. Encodes a N-myrystolylated plasma membrane associated member of the RLCK II family of IRAK/Pelle-like kinases that regulates the MAPK pathway that promotes the elongation of the Arabidopsis zygote and the development of its basal daughter cell into the extra-embryonic suspensor. SSP transcripts are produced in mature pollen but are not translated until delivery to the zygote and the endosperm after fertilization, exerting a paternal effect on embryonic development. The primary role of its kinase domain may lie in protein binding rather than in catalysis as key residues of the active site are absent. | 0 |
| RefSeq | XP_024016607.1 | probable inactive receptor-like kinase SSP [Eutrema salsugineum] | 0 |
| Q7XJT7 | Probable inactive receptor-like kinase BSK12 OS=Arabidopsis thaliana OX=3702 GN=BSK12 PE=1 SV=1 | 0 | |
| TrEMBL | V4M3L6 | Serine/threonine-protein kinase BSK OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022678mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G17090.1, AT2G17170.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022678m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g013360.2N, BniB04g026450.2N |